PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G21810.1
Common NameMSD21.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 437aa    MW: 50519.4 Da    PI: 5.6293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G21810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-09731126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykt+lC  f +tG C++ ++C+FaHg
  AT3G21810.1  7 YKTKLCILFNKTGDCSR-PNCTFAHG 31
                 9****************.*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-12438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76633IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-7731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSGSSMYKTK LCILFNKTGD CSRPNCTFAH GNAELRRPGE SSFTGRRHNM DSDLRDRRHN  60
MDSDLRDRLG RQFSPERRPS LDRSGRRVQR FSGHDNSMPF ENRRDKDYRE NRRFDERRDY  120
AGGLKVGNRI EDRAEDGRNK FHGYNNVLEE QLKDVEMDVK MLTDDKLRLE ASVERKAHEV  180
DILTSRIQEL ETQLDREKDE CRRITSSSKK FVKEYNRFLR AQDDLKRSEA RLQKLGNQLS  240
TYLAGSEGNN RDVGLDIVSD EETNGRNLRT ACDPHNELQN TSSLSRKKHY VDQYTTKEPV  300
EDGLIGRGEE EKVENEKKRP PCWNMLSSKS YSEEESGAWN DEDTINRSSS KEDNWKRRRF  360
SIGTSATDKV ILSTSMAARE FDDVAESEEE NPEAANGSPL ISLPPPPPFR DAHVQRDEDD  420
VNGDVMEQKK AYDDDSV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306863950.0
Genevisible257955_at0.0
Expression AtlasAT3G21810-
AtGenExpressAT3G21810-
ATTED-IIAT3G21810-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G21810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G21810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566691.10.0zinc finger CCCH domain-containing protein 40
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLD7L0X00.0D7L0X0_ARALL; Putative uncharacterized protein
STRINGAT3G21810.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Representative plantOGRP51641215
Publications ? help Back to Top
  1. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  5. Jones AM, et al.
    Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.
    J Proteomics, 2009. 72(3): p. 439-51
    [PMID:19245862]
  6. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]